Yu, Kefei

Kefei Yu

Associate Professor
B.S., 1992, Biochemistry, Nanjing University, China
Ph.D., 2000, Microbiology and Molecualr Immunology, University of Southern California
Research Associate, 2001-2007, Norris Cancer Center, University of Southern California

Department of Microbiology and Molecular Genetics
5175 Biomedical Physical Sciences
Michigan State University
East Lansing, MI 48824
 Phone: (517) 884-5354



1.  DNA recombination and DNA repair

2.  Transcription and regulation of gene expression

3.  Chromosomal translocations and genomic instability

The Yu lab studies DNA recombination and DNA repair in immune cells in association with antigen receptor gene diversification. This includes the site-directed V(D)J recombination that assembles the antigen binding domain of the immunoglobulin (Ig) and T cell receptor genes; and a region-specific class switch recombination (CSR) that changes the Ig constant region. Both events involve DNA double strand break intermediates that, if not repaired properly, can cause chromosomal deletions or translocations.

CSR is an intra-chromosomal deletion in antigen-stimulated B cells that allows Ig isotype switching from IgM/IgD to IgG, IgA or IgE. Failure of CSR leads to hyper-IgM syndrome.  Dysregulation of CSR contributes to oncogenic chromosomal translocations frequently observed in B cell lymphomas. CSR is directed by large repetitive DNA regions (2~12kb) that lack extensive homology or conserved signal sequences.  Another process also occurring in stimulated B cells is somatic hypermutation (SHM), which mutates the Ig variable regions to allow Ig affinity maturation. Like CSR, defective SHM leads to immunodeficiency, and aberrant targeting of SHM to non-Ig genes can produce oncogene mutations or chromosomal translocations in various types of B cell malignancies. Both SHM and CSR are initiated by a lymphoid specific factor called activation-induced cytidine deaminase (AID) that catalyzes DNA cytosine deamination at Ig variable and switch regions, respectively.  AID is a small protein that shares homology to a large family of polynucleotide cytidine deaminases.  Members of this family have diverse functions in RNA editing, gene conversion, Ig diversification, and host defense against retroviral infections.

We are currently focusing on studying: (1) the targeting mechanism and regulation of AID. (2) the mechanism of generating DNA breaks at switch regions during B cells class switch recombination. (3) the repair of switch region DNA breaks and their involvement in oncogenic translocations.


Representative Publications

Kim A, Han L, Santiago GE, Verdun RE, and Yu K. 2016. Class-Switch Recombination in the Absence of the IgH 3' Regulatory Region. J Immunol. 197(7): 2930-5.

Masani S, Han L, Meek K, Yu K. 2016. Redundant function of DNA ligase 1 and 3 in alternative end-joining during immunoglobulin class switch recombination. Proc Natl Acad Sci U S A 113(5):1261-1266.

Han L., Masani S, Hsieh, CL. and Yu K. 2014. DNA Ligase I Is Not Essential for Mammalian Cell Viability, Cell Reports. (2014), 7: 316-320.

Masani, S., L. Han, and Yu K. 2013. Apurinic/apyrimidinic endonuclease 1 is the essential nuclease during immunoglobulin class switch recombination. Mol Cell Biol. 1468-1473.

Han, L., W. Mao, and Yu K. 2012. X-ray repair cross-complementing protein 1 (XRCC1) deficiency enhances class switch recombination and is permissive for alternative end joining. Proc Natl Acad Sci U S A. 109:4604-4608.

Han, L., S. Masani, and Yu K. 2011. Overlapping activation-induced cytidine deaminase hotspot motifs in Ig class-switch recombination. Proc Natl Acad Sci U S A. 108:11584-11589.

Han, L., S. Masani, and Yu K. 2010. Cutting edge: CTNNBL1 is dispensable for Ig class switch recombination. J Immunol. 185:1379-1381.

Han, L., and Yu K. 2008. Altered kinetics of nonhomologous end joining and class switch recombination in ligase IV-deficient B cells. J Exp Med. 205:2745-2753.



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